Index

A

add_annotation_layer() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.neuroglancer) add_skeleton_layer() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.neuroglancer)

attach_synapses() (in module crantpy) (in module crantpy.queries) (in module crantpy.queries.connections)

C

cached_per_id() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.decorators) cached_result() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.decorators) chunks_to_nm() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize) clear_all_caches() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load) clear_cave_client_cache() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load) clear_cloudvolume_cache() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load) clear_global_cache() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.decorators) configure_urllib3_warning_suppression() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize) construct_scene() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.neuroglancer) crantpy module

crantpy.queries module crantpy.queries.connections module crantpy.utils module crantpy.utils.cave module crantpy.utils.cave.auth module crantpy.utils.cave.helpers module crantpy.utils.cave.load module crantpy.utils.config module crantpy.utils.decorators module crantpy.utils.exceptions module crantpy.utils.helpers module crantpy.utils.neuroglancer module crantpy.utils.types module crantpy.viz module crantpy.viz.skeletonize module create_sql_query() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers)

D

decode_url() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.neuroglancer) detect_soma_mesh() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize)

detect_soma_skeleton() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize) divide_local_neighbourhood() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize)

E

encode_url() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.neuroglancer)

F

filter_df() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers)

FilteringError, [1], [2]

G

generate_cave_token() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.auth) get_adjacency() (in module crantpy) (in module crantpy.queries) (in module crantpy.queries.connections) get_cave_client() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load) get_cave_datastacks() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load) get_cloudvolume() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load) get_connectivity() (in module crantpy) (in module crantpy.queries) (in module crantpy.queries.connections) get_current_cave_token() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.auth)

get_dataset_segmentation_source() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load) get_datastack_segmentation_source() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load) get_global_cache() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.decorators) get_skeletons() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize) get_soma_from_annotations() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize) get_synapse_counts() (in module crantpy) (in module crantpy.queries) (in module crantpy.queries.connections) get_synapses() (in module crantpy) (in module crantpy.queries) (in module crantpy.queries.connections)

I

inject_dataset() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.decorators) is_latest_roots() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.helpers)

is_valid_root() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.helpers) is_valid_supervoxel() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.helpers)

M

make_iterable() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers) map_position_to_node() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers) match_dtype() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers) module crantpy crantpy.queries crantpy.queries.connections crantpy.utils crantpy.utils.cave crantpy.utils.cave.auth crantpy.utils.cave.helpers crantpy.utils.cave.load crantpy.utils.config crantpy.utils.decorators crantpy.utils.exceptions crantpy.utils.helpers crantpy.utils.neuroglancer crantpy.utils.types crantpy.viz crantpy.viz.skeletonize

N

neurons_to_url() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.neuroglancer)

NoMatchesError, [1], [2]

P

parse_neuroncriteria() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.decorators) parse_root_ids() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.helpers) (in module crantpy.utils.helpers)

parse_timestamp() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers) plot_em_image() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers)

R

reroot_at_soma() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers) retry() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers)

retry_func() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.decorators)

S

scene_to_url() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.neuroglancer) set_cave_token() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.auth) set_default_dataset() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.config) set_logging_level() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers)

skeletonize_neuron() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize) skeletonize_neurons_parallel() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize) suppress_urllib3_connectionpool_warnings() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize)

V

validate_cave_client() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load)