Index

A

add_annotation_layer() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.neuroglancer) add_skeleton_layer() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.neuroglancer)

annotations (crantpy.NeuronCriteria property) (crantpy.queries.NeuronCriteria property) (crantpy.queries.neurons.NeuronCriteria property) available_fields() (crantpy.NeuronCriteria class method) (crantpy.queries.NeuronCriteria class method) (crantpy.queries.neurons.NeuronCriteria class method)

C

cached_result() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.decorators) chunks_to_nm() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.l2) (in module crantpy.viz.skeletonize) clear_all_caches() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load) clear_cave_client_cache() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load) clear_cloudvolume_cache() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load) clear_global_cache() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.decorators) configure_urllib3_warning_suppression() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize) construct_scene() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.neuroglancer) crantpy module crantpy.queries module crantpy.queries.connections module crantpy.queries.neurons module

crantpy.utils module crantpy.utils.cave module crantpy.utils.cave.auth module crantpy.utils.cave.helpers module crantpy.utils.cave.load module crantpy.utils.cave.segmentation module crantpy.utils.config module crantpy.utils.decorators module crantpy.utils.exceptions module crantpy.utils.helpers module crantpy.utils.neuroglancer module crantpy.utils.seatable module crantpy.utils.types module crantpy.viz module crantpy.viz.l2 module crantpy.viz.mesh module crantpy.viz.skeletonize module create_sql_query() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers)

D

decode_url() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.neuroglancer) detect_soma() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.mesh) detect_soma_mesh() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize)

detect_soma_skeleton() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize) divide_local_neighbourhood() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize)

E

encode_url() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.neuroglancer)

F

filter_df() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers) FilteringError, [1], [2] find_anchor_loc() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.l2)

find_common_time() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.segmentation)

G

generate_cave_token() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.auth) get_adjacency() (in module crantpy) (in module crantpy.queries) (in module crantpy.queries.connections) get_all_seatable_annotations() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.seatable) get_annotations() (in module crantpy) (in module crantpy.queries) (in module crantpy.queries.neurons) get_brain_mesh_scene() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.mesh) get_cave_client() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load) get_cave_datastacks() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load) get_cloudvolume() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load) get_connectivity() (in module crantpy) (in module crantpy.queries) (in module crantpy.queries.connections) get_current_cave_token() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.auth) get_dataset_segmentation_source() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load) get_datastack_segmentation_source() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load) get_global_cache() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.decorators) get_l2_chunk_info() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.l2) get_l2_dotprops() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.l2)

get_l2_graph() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.l2) get_l2_info() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.l2) get_l2_meshes() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.l2) get_l2_skeleton() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.l2) get_lineage_graph() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.segmentation) get_mesh_neuron() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.mesh) get_proofread_neurons() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.seatable) get_roots() (crantpy.NeuronCriteria method) (crantpy.queries.NeuronCriteria method) (crantpy.queries.neurons.NeuronCriteria method) get_seatable_base_object() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.seatable) get_seatable_cache_name() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.seatable) get_segmentation_cutout() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.segmentation) get_skeletons() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize) get_soma_from_annotations() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize) get_synapse_counts() (in module crantpy) (in module crantpy.queries) (in module crantpy.queries.connections) get_synapses() (in module crantpy) (in module crantpy.queries) (in module crantpy.queries.connections) get_voxels() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.segmentation)

I

inject_dataset() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.decorators) is_empty (crantpy.NeuronCriteria property) (crantpy.queries.NeuronCriteria property) (crantpy.queries.neurons.NeuronCriteria property) is_latest_roots() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.helpers)

is_proofread() (in module crantpy) (in module crantpy.queries) (in module crantpy.queries.neurons) is_valid_root() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.helpers) is_valid_supervoxel() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.helpers)

L

load_whole_brain_mesh() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.mesh) locs_to_segments() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.segmentation)

locs_to_supervoxels() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.segmentation)

M

make_iterable() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers) match_dtype() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers) module crantpy crantpy.queries crantpy.queries.connections crantpy.queries.neurons crantpy.utils crantpy.utils.cave crantpy.utils.cave.auth crantpy.utils.cave.helpers crantpy.utils.cave.load crantpy.utils.cave.segmentation crantpy.utils.config crantpy.utils.decorators crantpy.utils.exceptions crantpy.utils.helpers crantpy.utils.neuroglancer crantpy.utils.seatable crantpy.utils.types crantpy.viz crantpy.viz.l2 crantpy.viz.mesh crantpy.viz.skeletonize

N

neuron_to_segments() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.segmentation) NeuronCriteria (class in crantpy) (class in crantpy.queries) (class in crantpy.queries.neurons)

neurons_to_url() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.neuroglancer) NoMatchesError, [1], [2]

P

parse_neuroncriteria() (in module crantpy) (in module crantpy.queries) (in module crantpy.queries.neurons) (in module crantpy.utils) (in module crantpy.utils.decorators) parse_root_ids() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.helpers) (in module crantpy.utils.helpers)

parse_timestamp() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers) plot_em_image() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers)

R

retry() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers) retry_func() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.decorators)

roots_to_supervoxels() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.segmentation)

S

scene_to_url() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.neuroglancer) set_cave_token() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.auth) set_default_dataset() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.config) set_logging_level() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.helpers) skeletonize_neuron() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize)

skeletonize_neurons_parallel() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize) snap_to_id() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.segmentation) supervoxels_to_roots() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.segmentation) suppress_urllib3_connectionpool_warnings() (in module crantpy) (in module crantpy.viz) (in module crantpy.viz.skeletonize)

T

to_neuroglancer() (crantpy.NeuronCriteria method) (crantpy.queries.NeuronCriteria method) (crantpy.queries.neurons.NeuronCriteria method)

U

update_ids() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.segmentation)

V

validate_cave_client() (in module crantpy) (in module crantpy.utils) (in module crantpy.utils.cave) (in module crantpy.utils.cave.load)